Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs28612538 chr14:71025206 G/A 1.43E-5 133 39.38 65.47 21.43 KM Plot
TGCT rs2877672 chr14:71036259 T/C 1.43E-5 133 39.38 65.47 21.43 KM Plot
TGCT rs2883671 chr1:49039233 A/T 1.31E-6 129 37.3 111.63 0.57 KM Plot
TGCT rs28886899 chr7:127780054 A/T 2.11E-9 133 42.18 37.53 12.55 KM Plot
TGCT rs295106 chr17:32815135 A/G 0.000126 129 24.27 60.73 37.5 KM Plot
TGCT rs2986592 chr13:21843561 G/T 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs3071131 chr17:39340474 ATGC/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs3214973 chr12:129283466 CG/C 1.39E-5 134 41.33 44.28 29.53 KM Plot
TGCT rs322734 chr7:127786905 T/C 1.8E-9 134 43.68 37.32 12.55 KM Plot
TGCT rs33912877 chr18:37834895 GAA/G 1.67E-5 134 19.23 111.63 40.57 KM Plot
TGCT rs34022241 chr4:47425820 T/C 0.000163 130 46.3 34.23 51.6 KM Plot
TGCT rs34168622 chr3:172439738 TC/T 8.37E-5 134 25.33 37.42 45.83 KM Plot
TGCT rs34245956 chr12:107082547 AT/A 0.000127 131 44.52 45.47 28.8 KM Plot
TGCT rs34288126 chr7:128735438 G/A 1.86E-5 133 42.18 32.95 17.1 KM Plot
TGCT rs34296381 chr5:42566773 C/CTT 9.49E-5 132 38.2 63.68 20.23 KM Plot